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Registros recuperados : 30 | |
1. | | FERRÉS, I.; FRESIA, P.; IRAOLA, G. simurg: simulate bacterial pangenomes in R. (Application note) Bioinformatics, 15 February 2020, Volume 36, Issue 4, Pages 1273-1274. Doi: https://doi.org/10.1093/bioinformatics/btz735 Article history: Received: 19 March 2019 / Revision received: 06 August 2019 / Accepted: 25 September 2019 / Published: 04 October 2019.
Corresponding author: Ferrés, I.; Microbial Genomics Laboratory, Institut Pasteur Montevideo,...Biblioteca(s): INIA Las Brujas. |
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3. | | BERNASCHINA, Y.; GARAYCOCHEA, S.; FRESIA, P.; LEONI, C. Efecto del manejo de suelo en la salud del viñedo. In: Sociedad Uruguaya de Fitopatología Jornada Uruguaya de Fitopatología, 6., Jornada Uruguaya de Protección Vegetal, 4., 21-22 octubre, 2021, Montevideo, Uruguay. Libro de resúmenes. Montevideo (UY): Sociedad Uruguay de Fitopatología (SUFIT), 2021. p. 27. Financiamiento: INIA - Proyecto INIA FR22: Respuesta fisiológica de frutales al estrés biótico y abiótico; componente 1: Respuestas fisiológicas de la vid al estrés hídrico y estrés biótico (Botrytis cinerea).Biblioteca(s): INIA Treinta y Tres. |
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4. | | VILLAR, A.; FRESIA, P.; CENTURIÓN, C.; TAVARES, E.; ABREO, E. P41. Comunidad microbiana asociada a clones de Eucalyptus dunnii y su efecto en el enraizamiento y sanidad de las estacas en vivero. [Poster]. Posters. In: Sociedad Uruguaya de Fitopatología (SUFIT). Jornada Uruguaya de Fitopatología, 7., Jornada Uruguaya de Protección Vegetal, 5., 10 noviembre 2023, Montevideo, Uruguay. Libro de resúmenes. 30 años SUFIT, 1993-2023. Montevideo (UY): Sociedad Uruguay de Fitopatología (SUFIT), 2023. p. 67. Financiamiento: UPM Biofore Uruguay; Instituto Nacional de Investigación Agropecuaria. -- Autor correspondencia: E-mail: avillar@inia.org.uyBiblioteca(s): INIA Las Brujas. |
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7. | | BERGAMO, L.W.; SILVA-BRANDÃO, K.L.; VICENTINI, R.; FRESIA, P.; AZEREDO-ESPIN, A.M.L Genetic differentiation of a new world screwworm fly population from uruguay detected by snps, mitochondrial dna and microsatellites in two consecutive years. Insects, August 2020, Volume 11, Issue 8, Pages 1-16, Article number 539. OPEN ACCESS. DOI: https://doi.org/10.3390/insects11080539 Article history: Received 9 July 2020; Revised 2 August 2020; Accepted 9 August 2020; Published 16 August 2020.
This article belongs to the Special Issue Population Genetics of Insects -...Biblioteca(s): INIA Las Brujas. |
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8. | | COSTA, D.; LÉVESQUE, S.; KUMAR, N.; FRESIA, P.; FERRÉS, I.; LAWLEY, T. D.; IRAOLA, G. Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts. Scientific Reports, 2021, Volume 11, Issue 1, Article number 3431. OPEN ACCESS. Doi: https://doi.org/10.1038/s41598-021-82993-9 Article history: Received 12 February 2018; Accepted 24 January 2021; Published 09 February 2021.Biblioteca(s): INIA Las Brujas. |
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9. | | NOVAS, R.; BASIKA, T.; WILLIAMSON, M. E.; FRESIA, P.; MENCHACA, A.; SCOTT, M. J. Identification and functional analysis of Cochliomyia hominivorax U6 gene promoters. Insect Molecular Biology, 2023. Early View. https://doi.org/10.1111/imb.12875 -- OPEN ACCESS. Article history: Received 9 March 2023, Accepted 4 August 2023, First published 21 September 2023. -- Scott, M.J.; Department of Entomology and Plant Pathology, North Carolina State University, Campus Box 7613, Raleigh, NC, United...Biblioteca(s): INIA Las Brujas. |
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10. | | KAVANOVÁ, M.; GARCIA, A.; FRESIA, P.; CONDON, F.; KASPARY, T. E.; CASTILLO, A.; DO CANTO, J. Múltiples orígenes de la resistencia a glifosato en las poblaciones de raigrás anual en la región. In: Sociedad Uruguaya de Fitopatología Jornada Uruguaya de Fitopatología, 6., Jornada Uruguaya de Protección Vegetal, 4., 21-22 octubre, 2021, Montevideo, Uruguay. Libro de resúmenes. Montevideo (UY): Sociedad Uruguay de Fitopatología (SUFIT), 2021. p. 80 Financiamiento: Agencia Nacional de Investigación e Innovación (FMV_3_2018_1_148682)Biblioteca(s): INIA Treinta y Tres. |
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11. | | TORRES, P.; ALTIER, N.; BEYHAUT, E.; FRESIA, P.; GARAYCOCHEA, S.; ABREO, E. Phenotypic, genomic and in planta characterization of Bacillus sensu lato for their phosphorus biofertilization and plant growth promotion features in soybean. Microbiological Research, 2024, Volume 280, e127566. https://doi.org/10.1016/j.micres.2023.127566 Article history: Received 12 November 2023; Received in revised form 30 November 2023; Accepted 2 December 2023; Available online 6 December 2023. -- Correspondence: Abreo, E.; Estación Experimental Wilson Ferreira Aldunate, Ruta 48 km...Biblioteca(s): INIA Las Brujas. |
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12. | | DO CANTO, J.; KAVANOVÁ, M.; GARCIA, A.; FRESIA, P.; KASPARY, T. E.; CONDON, F.; CASTILLO, A. Resistencia a glifosato en raigrás anual en Uruguay. ¿La importamos o la generamos en el país? Revista INIA Uruguay, Setiembre 2021, no.66, p. 95-98. (Revista INIA; 66).Biblioteca(s): INIA Treinta y Tres. |
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16. | | CABRERA, A.; PITA, S.; GONZÁLEZ, T.; VIERA, A.; VERGER, L.; PIEGAS, S.; WILLAT, G.; FRESIA, P.; BASMADJIÁN, Y. Genetic variability highlights the invasion route of the Lutzomyia longipalpis complex, the main vector of Visceral Leishmaniasis in Uruguay. Zoonoses and Public Health. 2023, Volume 70, Issue 5, Pages 383-392. doi: https://doi.org/10.1111/zph.13036 Article history: First published 10 March 2023. -- Correspondence author: Andrés, C.; Departamento de Parasitología y Micología, Instituto de Higiene, Facultad de Medicina, UdelaR, Montevideo, Uruguay; email:andresmcc1@gmail.com --...Biblioteca(s): INIA Las Brujas. |
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17. | | CERECETTO, V.; SMALLA , K.; NESME, J; GARAYCOCHEA, S.; FRESIA, P.; SØRENSEN, S.J.; BABIN, D.; LEONI, C. Reduced tillage, cover crops and organic amendments affect soil microbiota and improve soil health in Uruguayan vegetable farming systems. FEMS Microbiology Ecology, March 2021, Volume 97, Issue 3, fiab023. Doi: https://doi.org/10.1093/femsec/fiab023 Article history: Received 05 August 2020; Accepted 04 February 2021; Published 06 February 2021.
Editor: Angela Sessitsch.
This work was supported by Instituto Nacional de Investigación Agropecuaria, Uruguay (Project INIA SA35 - Effect of...Biblioteca(s): INIA Las Brujas. |
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18. | | DO CANTO, J.; KAVANOVÁ, M.; GARCÍA, M.A.; DE AVILA, A.; FRESIA, P.; TUESCA, D.H.; CONDON, F.; GAINES, T. Proyecto: Resistencia a glifosato en raigrás anual en Uruguay-entender, reducir y prevenir- [Poster]. In: Encuentro Latinoamericano y del Caribe de Biotecnología Agropecuaria; Simposio RedBio Argentina, 11., Montevideo 12-15 noviembre, 2019. Serie Técnica 253: Libro de Resúmenes.Biblioteca(s): INIA Tacuarembó. |
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19. | | VASINI, B.; FARACE, P.; ARIEL, A.; CIRONE, K.; MÉNDEZ, L.; MORSELLA, C.; FRESIA, P.; IRAOLA, G.; GIOFFRÉ, A.; PAOLICCHI, F. Phylogenetic and multiple-locus variable number tandem repeat analysis of Mycobacterium avium subsp. paratuberculosis isolates from Argentina. Veterinary Research Communications, December 2022, Volume 46, Issue 4, pages 1121-1129. doi: https://doi.org/10.1007/s11259-022-09983-8 Article history: Received 24 February 2022; Accepted 3 August 2022. -- Corresponding author: Vasini, B.; Laboratorio de Bacteriología-Grupo de Sanidad Animal, Unidad Integrada INTA-Universidad Nacional de Mar del Plata-Balcarce, Buenos...Biblioteca(s): INIA Las Brujas. |
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20. | | ETCHEVERS, I.; IRIARTE, M.V.; MARQUES, L.; FERENCZI, A.; DALLA RIZZA, M.; MARZAROLI, J.; SARAVIA, A.; FRESIA, P. Review on ecological interactions of the Cochliomyia hominivorax fly and assessment of the possible impacts of its eradication in Uruguay. [Revisión de las interacciones ecológicas de la mosca Cochliomyia hominivorax y evaluación de los posibles impactos ecológicos de su erradicación en Uruguay]. [Revisão das interações ecológicas da mosca Cochliomyia hominivorax e avaliação dos possíveis impactos ecológicos de sua erradicação no Uruguai]. Review. Agrociencia Uruguay, 2022, Vol.26, number 2, e1056. https://doi.org/10.31285/AGRO.26.1056 -- OPEN ACCESS. Article history: Received 12 May 2022; Accepted 19 Jul 2022; Published 16 Sep 2022. -- Correspondence: Ismael Etchevers, ismaelec@gmail.com ; Pablo Fresia,
pfresia@pasteur.edu.uy -- Editor: Milka Ferrer, Universidad de la República,...Biblioteca(s): INIA Las Brujas. |
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Registros recuperados : 30 | |
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| Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha actual : |
23/03/2020 |
Actualizado : |
23/03/2020 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Circulación / Nivel : |
Internacional - -- |
Autor : |
FERRÉS, I.; FRESIA, P.; IRAOLA, G. |
Afiliación : |
IGNACIO FERRÉS, Microbial Genomics Laboratory, Institut Pasteur Montevideo, Montevideo, Uruguay.; PABLO FRESIA, Microbial Genomics Laboratory, Institut Pasteur Montevideo, Montevideo, Uruguay; Unidad Mixta UMPI, Institut Pasteur Montevideo + INIA, Montevideo, Uruguay; GREGORIO IRAOLA, Microbial Genomics Laboratory, Institut Pasteur Montevideo, Montevideo, Uruguay; Center for Integrative Biology, Universidad Mayor, Santiago de Chile, Chile; Wellcome Sanger Institute, Hinxton, United Kingdom. |
Título : |
simurg: simulate bacterial pangenomes in R. (Application note) |
Fecha de publicación : |
2020 |
Fuente / Imprenta : |
Bioinformatics, 15 February 2020, Volume 36, Issue 4, Pages 1273-1274. Doi: https://doi.org/10.1093/bioinformatics/btz735 |
ISSN : |
1367-4803 |
DOI : |
10.1093/bioinformatics/btz735 |
Idioma : |
Inglés |
Notas : |
Article history: Received: 19 March 2019 / Revision received: 06 August 2019 / Accepted: 25 September 2019 / Published: 04 October 2019.
Corresponding author: Ferrés, I.; Microbial Genomics Laboratory, Institut Pasteur Montevideo, Uruguay; email:iferres@pasteur.edu.uy |
Contenido : |
ABSTRACT.
Motivation: The pangenome concept describes genetic variability as the union of genes shared in a set of genomes and constitutes the current paradigm for comparative analysis of bacterial populations. However, there is a lack of tools to simulate pangenome variability and structure using defined evolutionary models. Results: We developed simurg, an R package that allows to simulate bacterial pangenomes using different combinations of evolutionary constraints such as gene gain, gene loss and mutation rates. Our tool allows the straightforward and reproducible simulation of bacterial pangenomes using real sequence data, providing a valuable tool for benchmarking of pangenome software or comparing evolutionary hypotheses. © 2020 Oxford University Press. All rights reserved. |
Palabras claves : |
Benchmarking; Genome analysis; Mutation rate; Software. |
Asunto categoría : |
A50 Investigación agraria |
Marc : |
LEADER 01755naa a2200229 a 4500 001 1060940 005 2020-03-23 008 2020 bl uuuu u00u1 u #d 022 $a1367-4803 024 7 $a10.1093/bioinformatics/btz735$2DOI 100 1 $aFERRÉS, I. 245 $asimurg$bsimulate bacterial pangenomes in R. (Application note)$h[electronic resource] 260 $c2020 500 $aArticle history: Received: 19 March 2019 / Revision received: 06 August 2019 / Accepted: 25 September 2019 / Published: 04 October 2019. Corresponding author: Ferrés, I.; Microbial Genomics Laboratory, Institut Pasteur Montevideo, Uruguay; email:iferres@pasteur.edu.uy 520 $aABSTRACT. Motivation: The pangenome concept describes genetic variability as the union of genes shared in a set of genomes and constitutes the current paradigm for comparative analysis of bacterial populations. However, there is a lack of tools to simulate pangenome variability and structure using defined evolutionary models. Results: We developed simurg, an R package that allows to simulate bacterial pangenomes using different combinations of evolutionary constraints such as gene gain, gene loss and mutation rates. Our tool allows the straightforward and reproducible simulation of bacterial pangenomes using real sequence data, providing a valuable tool for benchmarking of pangenome software or comparing evolutionary hypotheses. © 2020 Oxford University Press. All rights reserved. 653 $aBenchmarking 653 $aGenome analysis 653 $aMutation rate 653 $aSoftware 700 1 $aFRESIA, P. 700 1 $aIRAOLA, G. 773 $tBioinformatics, 15 February 2020, Volume 36, Issue 4, Pages 1273-1274. Doi: https://doi.org/10.1093/bioinformatics/btz735
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